I see a lot of people are on cipro/flagyl. Do you take both everyday or rotate them (flagyl for a week then cipro for a week)? My son was just diagnosed with Crohns/Pouchitis only 3 months after takedown and is having multiple stools and nighttime incontinence. He has been on Flagyl for a week with no improvement. I asked his doc if they could try adding Cipro (based upon what I see on here) and he agreed to call in the prescription.